HL_6WOO_079

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_079 not in the Motif Atlas

Geometric match to HL_3AM1_002

Geometric discrepancy: 0.272

The information below is about HL_3AM1_002

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6WOO|1|5|A|1760
6WOO|1|5|C|1761
6WOO|1|5|C|1762
6WOO|1|5|U|1763
6WOO|1|5|U|1764
6WOO|1|5|U|1765

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

eL19