HL_6WOO_080

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

6WOO|1|5|C|1793, 6WOO|1|5|G|1794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_080 not in the Motif Atlas

Homologous match to HL_5TBW_040

Geometric discrepancy: 0.0776

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6WOO|1|5|C|1792
6WOO|1|5|C|1793
6WOO|1|5|G|1794
6WOO|1|5|U|1795
6WOO|1|5|G|1796

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain p

eL43