HL_6WOO_086

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6WOO|1|5|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_086 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0867

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6WOO|1|5|A|2164
6WOO|1|5|G|2165
6WOO|1|5|A|2166
6WOO|1|5|A|2167
6WOO|1|5|A|2168
6WOO|1|5|G|2169
6WOO|1|5|U|2170

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

eL15