HL_6WOO_087

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_087 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1083

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6WOO|1|5|A|2220
6WOO|1|5|G|2221
6WOO|1|5|A|2222
6WOO|1|5|A|2223
6WOO|1|5|A|2224
6WOO|1|5|U|2225

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain i

eL36

Chain o

eL42

Chain q

uL1