HL_6WOO_090

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6WOO|1|5|A|2372, 6WOO|1|5|A|2373, 6WOO|1|5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_090 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0731

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6WOO|1|5|G|2369
6WOO|1|5|G|2370
6WOO|1|5|G|2371
6WOO|1|5|A|2372
6WOO|1|5|A|2373
6WOO|1|5|C|2374
6WOO|1|5|G|2375
6WOO|1|5|G|2376
6WOO|1|5|G|2377
6WOO|1|5|C|2378

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain e

eL32