HL_6WOO_097

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_097 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0775

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6WOO|1|5|C|2693
6WOO|1|5|A|2694
6WOO|1|5|A|2695
6WOO|1|5|A|2696
6WOO|1|5|A|2697
6WOO|1|5|G|2698
6WOO|1|5|G|2699
6WOO|1|5|G|2700

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain I

uL16

Chain T

eL21