HL_6WOO_104

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_104 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.0944

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6WOO|1|5|C|2963
6WOO|1|5|G|2964
6WOO|1|5|U|2965
6WOO|1|5|G|2966
6WOO|1|5|A|2967
6WOO|1|5|G|2968

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2