HL_6WOO_107
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6WOO|1|5|G|3116, 6WOO|1|5|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_107 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0755
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6WOO|1|5|C|3110
6WOO|1|5|U|3111
6WOO|1|5|G|3112
6WOO|1|5|A|3113
6WOO|1|5|A|3114
6WOO|1|5|C|3115
6WOO|1|5|G|3116
6WOO|1|5|C|3117
6WOO|1|5|C|3118
6WOO|1|5|U|3119
6WOO|1|5|C|3120
6WOO|1|5|U|3121
6WOO|1|5|A|3122
6WOO|1|5|A|3123
6WOO|1|5|G|3124
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain H
- uL6
- Chain O
- uL13
- Chain m
- eL40
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