HL_6WOO_110

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

6WOO|1|5|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_110 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1196

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6WOO|1|5|G|3303
6WOO|1|5|U|3304
6WOO|1|5|A|3305
6WOO|1|5|U|3306
6WOO|1|5|A|3307
6WOO|1|5|C|3308
6WOO|1|5|G|3309
6WOO|1|5|A|3310
6WOO|1|5|C|3311

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31