HL_6WQN_004

3D structure

PDB id

6WQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUUAUGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQN_004 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.3077

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6WQN|1|1|G|135
6WQN|1|1|A|136
6WQN|1|1|G|137
6WQN|1|1|U|138
6WQN|1|1|U|139
6WQN|1|1|A|140
6WQN|1|1|U|141
6WQN|1|1|G|142
6WQN|1|1|U|143
6WQN|1|1|C|144

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23