HL_6WQQ_004

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2502

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6WQQ|1|1|A|136
6WQQ|1|1|G|137
6WQQ|1|1|U|138
6WQQ|1|1|U|139
6WQQ|1|1|A|140
6WQQ|1|1|U|141
6WQQ|1|1|G|142
6WQQ|1|1|U|143

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23