HL_6WQQ_016

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6WQQ|1|1|U|590, 6WQQ|1|1|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_016 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.2289

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6WQQ|1|1|C|587
6WQQ|1|1|G|588
6WQQ|1|1|U|589
6WQQ|1|1|U|590
6WQQ|1|1|A|591
6WQQ|1|1|A|592
6WQQ|1|1|U|593
6WQQ|1|1|G|594

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L20

Chain D

50S ribosomal protein L21

Chain V

50S ribosomal protein L13