HL_6WQQ_034

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

6WQQ|1|1|U|1433, 6WQQ|1|1|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_034 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1606

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WQQ|1|1|G|1426
6WQQ|1|1|U|1427
6WQQ|1|1|U|1428
6WQQ|1|1|G|1429
6WQQ|1|1|A|1430
6WQQ|1|1|U|1431
6WQQ|1|1|A|1432
6WQQ|1|1|U|1433
6WQQ|1|1|U|1434
6WQQ|1|1|C|1435

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L23