HL_6WQQ_035

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCGAUUGGAUUGC

Length

15 nucleotides

Bulged bases

6WQQ|1|1|U|1498, 6WQQ|1|1|U|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_035 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.2579

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6WQQ|1|1|G|1492
6WQQ|1|1|U|1493
6WQQ|1|1|G|1494
6WQQ|1|1|C|1495
6WQQ|1|1|G|1496
6WQQ|1|1|A|1497
6WQQ|1|1|U|1498
6WQQ|1|1|U|1499
6WQQ|1|1|G|1500
6WQQ|1|1|G|1501
6WQQ|1|1|A|1502
6WQQ|1|1|U|1503
6WQQ|1|1|U|1504
6WQQ|1|1|G|1505
6WQQ|1|1|C|1506

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L17