HL_6WQQ_036

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGUCCGGUAG

Length

11 nucleotides

Bulged bases

6WQQ|1|1|C|1541

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_036 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3352

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6WQQ|1|1|C|1524
6WQQ|1|1|U|1525
6WQQ|1|1|G|1526
6WQQ|1|1|U|1540
6WQQ|1|1|C|1541
6WQQ|1|1|C|1542
6WQQ|1|1|G|1543
6WQQ|1|1|G|1544
6WQQ|1|1|U|1545
6WQQ|1|1|A|1546
6WQQ|1|1|G|1556

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2