HL_6WQQ_062

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_062 not in the Motif Atlas

Homologous match to HL_4WF9_061

Geometric discrepancy: 0.1806

The information below is about HL_4WF9_061

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6WQQ|1|1|U|2728
6WQQ|1|1|G|2729
6WQQ|1|1|C|2730
6WQQ|1|1|C|2731
6WQQ|1|1|A|2732
6WQQ|1|1|A|2733

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L17