HL_6WQQ_065

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

6WQQ|1|1|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WQQ_065 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1177

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6WQQ|1|1|A|2839
6WQQ|1|1|A|2840
6WQQ|1|1|A|2841
6WQQ|1|1|G|2842
6WQQ|1|1|A|2843
6WQQ|1|1|U|2844
6WQQ|1|1|G|2845
6WQQ|1|1|A|2846
6WQQ|1|1|U|2847

Current chains

Chain 1

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain Z

50S ribosomal protein L17