3D structure

PDB id
6WRS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGUAAGUAA
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WRS_002 not in the Motif Atlas
Homologous match to HL_4WF9_002
Geometric discrepancy: 0.288
The information below is about HL_4WF9_002
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_77600.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6WRS|1|1|U|87
6WRS|1|1|G|88
6WRS|1|1|U|89
6WRS|1|1|A|90
6WRS|1|1|A|91
6WRS|1|1|G|92
6WRS|1|1|U|93
6WRS|1|1|A|94
6WRS|1|1|A|95

Current chains

Chain 1
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L23
Chain G
50S ribosomal protein L24
Chain K
50S ribosomal protein L29

Coloring options:


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