HL_6WRS_026

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAUAAGGU

Length

10 nucleotides

Bulged bases

6WRS|1|1|U|1002, 6WRS|1|1|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WRS_026 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2779

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6WRS|1|1|G|998
6WRS|1|1|U|999
6WRS|1|1|G|1000
6WRS|1|1|A|1001
6WRS|1|1|U|1002
6WRS|1|1|A|1003
6WRS|1|1|A|1004
6WRS|1|1|G|1005
6WRS|1|1|G|1006
6WRS|1|1|U|1007

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16