HL_6WRU_061

3D structure

PDB id

6WRU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

6WRU|1|1|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WRU_061 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1239

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6WRU|1|1|U|2555
6WRU|1|1|G|2556
6WRU|1|1|U|2557
6WRU|1|1|A|2558
6WRU|1|1|G|2559
6WRU|1|1|U|2560
6WRU|1|1|C|2561
6WRU|1|1|G|2562

Current chains

Chain 1

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L36

Chain U

50S ribosomal protein L6