HL_6WYV_016

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6WYV|1|I|U|546, 6WYV|1|I|A|547, 6WYV|1|I|G|548, 6WYV|1|I|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WYV_016 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3992

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6WYV|1|I|G|543
6WYV|1|I|C|544
6WYV|1|I|U|545
6WYV|1|I|U|546
6WYV|1|I|A|547
6WYV|1|I|G|548
6WYV|1|I|G|549
6WYV|1|I|C|550

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13