HL_6WYV_053

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6WYV|1|I|A|2268, 6WYV|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WYV_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0903

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|C|2264
6WYV|1|I|U|2265
6WYV|1|I|A|2266
6WYV|1|I|A|2267
6WYV|1|I|A|2268
6WYV|1|I|G|2269
6WYV|1|I|A|2270
6WYV|1|I|G|2271
6WYV|1|I|U|2272
6WYV|1|I|A|2273
6WYV|1|I|A|2274
6WYV|1|I|C|2275
6WYV|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains