3D structure

PDB id
6X7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGAGAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6X7K_028 not in the Motif Atlas
Homologous match to HL_4LFB_022
Geometric discrepancy: 0.2745
The information below is about HL_4LFB_022
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6X7K|1|D|A|1012
6X7K|1|D|G|1013
6X7K|1|D|A|1014
6X7K|1|D|G|1015
6X7K|1|D|A|1016
6X7K|1|D|U|1017

Current chains

Chain D
16S rRNA

Nearby chains

Chain S
30S ribosomal protein S14
Chain W
30S ribosomal protein S19

Coloring options:


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