6X7K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6X7K_007 | 1/D/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_6X7K_009 | 1/D/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_6X7K_012 | 1/D/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_6X7K_013 | 1/D/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_6X7K_014 | 1/D/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6X7K_015 | 1/D/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_6X7K_017 | 1/D/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_6X7K_018 | 1/D/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_6X7K_020 | 1/D/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_6X7K_021 | 1/D/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_6X7K_022 | 1/D/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_6X7K_023 | 1/D/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_6X7K_025 | 1/D/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_6X7K_026 | 1/D/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_6X7K_028 | 1/D/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_6X7K_029 | 1/D/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_6X7K_030 | 1/D/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_6X7K_032 | 1/D/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_6X7K_033 | 1/D/1265:1270 | GNRA | homologous HL_5J7L_027 NA | |
| HL_6X7K_034 | 1/D/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6X7K_035 | 1/D/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6X7K_001 | No text annotation | ||
| HL_6X7K_002 | tRNA anticodon loop | ||
| HL_6X7K_003 | T-loop with 2 stacked bulged bases | ||
| HL_6X7K_004 | No text annotation | ||
| HL_6X7K_005 | No text annotation | ||
| HL_6X7K_006 | T-loop with 2 stacked bulged bases | ||
| HL_6X7K_008 | No text annotation | ||
| HL_6X7K_010 | GNRA | ||
| HL_6X7K_109 | No text annotation | ||
| HL_6X7K_011 | No text annotation | ||
| HL_6X7K_016 | GNRA | ||
| HL_6X7K_019 | No text annotation | ||
| HL_6X7K_024 | No text annotation | ||
| HL_6X7K_027 | No text annotation | ||
| HL_6X7K_110 | No text annotation | ||
| HL_6X7K_031 | No text annotation | ||
| HL_6X7K_036 | UNCG | ||
| HL_6X7K_037 | GNRA | ||
| HL_6X7K_038 | No text annotation | ||
| HL_6X7K_039 | No text annotation | ||
| HL_6X7K_040 | No text annotation | ||
| HL_6X7K_041 | UNCG | ||
| HL_6X7K_042 | No text annotation | ||
| HL_6X7K_043 | No text annotation | ||
| HL_6X7K_044 | No text annotation | ||
| HL_6X7K_045 | No text annotation | ||
| HL_6X7K_046 | T-loop with 2 stacked bulged bases | ||
| HL_6X7K_047 | No text annotation | ||
| HL_6X7K_048 | T-loop with unstacked turn | ||
| HL_6X7K_049 | No text annotation | ||
| HL_6X7K_050 | Pseudoknot geometry | ||
| HL_6X7K_051 | GNRA | ||
| HL_6X7K_052 | GNRA | ||
| HL_6X7K_053 | No text annotation | ||
| HL_6X7K_054 | T-loop with 2 stacked bulged bases | ||
| HL_6X7K_055 | No text annotation | ||
| HL_6X7K_056 | GNRA | ||
| HL_6X7K_057 | No text annotation | ||
| HL_6X7K_058 | GNRA wlth tandem sheared | ||
| HL_6X7K_059 | No text annotation | ||
| HL_6X7K_060 | No text annotation | ||
| HL_6X7K_061 | No text annotation | ||
| HL_6X7K_111 | No text annotation | ||
| HL_6X7K_062 | No text annotation | ||
| HL_6X7K_063 | No text annotation | ||
| HL_6X7K_064 | No text annotation | ||
| HL_6X7K_065 | No text annotation | ||
| HL_6X7K_066 | GNRA wlth tandem sheared | ||
| HL_6X7K_067 | No text annotation | ||
| HL_6X7K_068 | GNRA | ||
| HL_6X7K_069 | T-loop with 2 stacked bulged bases | ||
| HL_6X7K_070 | Pseudoknot geometry with 3' bulge | ||
| HL_6X7K_071 | GNRA | ||
| HL_6X7K_072 | No text annotation | ||
| HL_6X7K_073 | Mini UNCG with extended bulge | ||
| HL_6X7K_074 | Pseudoknot geometry with 3' bulge | ||
| HL_6X7K_075 | UNCG | ||
| HL_6X7K_076 | Mini UNCG | ||
| HL_6X7K_077 | No text annotation | ||
| HL_6X7K_078 | GNRA | ||
| HL_6X7K_079 | UNCG | ||
| HL_6X7K_112 | No text annotation | ||
| HL_6X7K_080 | No text annotation | ||
| HL_6X7K_081 | No text annotation | ||
| HL_6X7K_082 | No text annotation | ||
| HL_6X7K_083 | GNRA related | ||
| HL_6X7K_084 | GNRA variation | ||
| HL_6X7K_085 | No text annotation | ||
| HL_6X7K_086 | No text annotation | ||
| HL_6X7K_087 | No text annotation | ||
| HL_6X7K_088 | No text annotation | ||
| HL_6X7K_089 | No text annotation | ||
| HL_6X7K_090 | No text annotation | ||
| HL_6X7K_091 | No text annotation | ||
| HL_6X7K_092 | No text annotation | ||
| HL_6X7K_114 | No text annotation | ||
| HL_6X7K_093 | Pseudoknot geometry | ||
| HL_6X7K_094 | GNRA | ||
| HL_6X7K_095 | GNRA | ||
| HL_6X7K_096 | No text annotation | ||
| HL_6X7K_097 | No text annotation | ||
| HL_6X7K_098 | GNRA variation | ||
| HL_6X7K_099 | No text annotation | ||
| HL_6X7K_100 | GNRA | ||
| HL_6X7K_101 | GNRA | ||
| HL_6X7K_102 | Ribsomal LSU H95 | ||
| HL_6X7K_103 | No text annotation | ||
| HL_6X7K_104 | No text annotation | ||
| HL_6X7K_115 | UNCG variation | ||
| HL_6X7K_105 | No text annotation | ||
| HL_6X7K_106 | GNRA | ||
| HL_6X7K_113 | No text annotation | ||
| HL_6X7K_107 | No text annotation | ||
| HL_6X7K_108 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6X7K_001 | 1/D/30:32, 1/D/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_6X7K_002 | 1/D/44:45, 1/D/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_6X7K_003 | 1/D/47:52, 1/D/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_6X7K_004 | 1/D/54:56, 1/D/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_6X7K_006 | 1/D/67:69, 1/D/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_6X7K_007 | 1/D/70:73, 1/D/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_6X7K_189 | 1/D/75:76, 1/D/93:95 | Single bulged G | homologous IL_5J7L_395 NA | |
| IL_6X7K_009 | 1/D/128:131, 1/D/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_6X7K_010 | 1/D/132:136, 1/D/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_6X7K_190 | 1/D/144:153, 1/D/168:178 | No text annotation | ||
| IL_6X7K_012 | 1/D/147:153, 1/D/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_6X7K_014 | 1/D/242:247, 1/D/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_6X7K_015 | 1/D/249:252, 1/D/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_6X7K_016 | 1/D/292:293, 1/D/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_6X7K_017 | 1/D/367:369, 1/D/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_6X7K_018 | 1/D/371:375, 1/D/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_6X7K_019 | 1/D/375:376, 1/D/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6X7K_020 | 1/D/409:416, 1/D/427:433 | No text annotation | geometric IL_6CZR_359 NA | |
| IL_6X7K_021 | 1/D/440:442, 1/D/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_6X7K_022 | 1/D/446:450, 1/D/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_6X7K_023 | 1/D/450:455, 1/D/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_6X7K_024 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_6X7K_026 | 1/D/569:575, 1/D/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_6X7K_027 | 1/D/580:584, 1/D/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_6X7K_028 | 1/D/594:596, 1/D/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_6X7K_029 | 1/D/597:598, 1/D/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_6X7K_030 | 1/D/605:612, 1/D/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_6X7K_031 | 1/D/654:655, 1/D/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_6X7K_032 | 1/D/658:659, 1/D/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_6X7K_033 | 1/D/662:666, 1/D/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_6X7K_034 | 1/D/673:678, 1/D/712:717 | No text annotation | geometric IL_5J7L_034 NA | |
| IL_6X7K_035 | 1/D/684:688, 1/D/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_6X7K_036 | 1/D/774:778, 1/D/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6X7K_037 | 1/D/779:783, 1/D/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_6X7K_038 | 1/D/887:894, 1/D/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_6X7K_039 | 1/D/922:923, 1/D/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_6X7K_040 | 1/D/925:927, 1/D/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_6X7K_041 | 1/D/933:935, 1/D/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_6X7K_042 | 1/D/953:954, 1/D/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6X7K_043 | 1/D/993:997, 1/D/1044:1045 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_6X7K_200 | 1/D/998:999, 1/D/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_6X7K_046 | 1/D/1048:1050, 1/D/1208:1209 | Single bulged U | geometric IL_5J7L_046 NA | |
| IL_6X7K_048 | 1/D/1052:1056, 1/D/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_6X7K_049 | 1/D/1057:1058, 1/D/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_6X7K_050 | 1/D/1060:1061, 1/D/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_6X7K_051 | 1/D/1061:1063, 1/D/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_6X7K_052 | 1/D/1124:1128, 1/D/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_6X7K_054 | 1/D/1158:1161, 1/D/1175:1181 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_6X7K_055 | 1/D/1247:1253, 1/D/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_6X7K_056 | 1/D/1255:1258, 1/D/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_6X7K_191 | 1/D/1255:1263, 1/D/1272:1282 | No text annotation | ||
| IL_6X7K_057 | 1/D/1259:1263, 1/D/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_6X7K_058 | 1/D/1303:1308, 1/D/1329:1334 | No text annotation | geometric IL_5J7L_057 NA | |
| IL_6X7K_059 | 1/D/1399:1401, 1/D/1501:1504 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_6X7K_062 | 1/D/1412:1414, 1/D/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6X7K_063 | 1/D/1416:1419, 1/D/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6X7K_064 | 1/D/1430:1435, 1/D/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6X7K_186 | No text annotation | ||
| IL_6X7K_187 | No text annotation | ||
| IL_6X7K_188 | No text annotation | ||
| IL_6X7K_005 | Multiple bulged bases | ||
| IL_6X7K_008 | Single bulged G, near cWW | ||
| IL_6X7K_011 | Isolated cWH basepair | ||
| IL_6X7K_013 | No text annotation | ||
| IL_6X7K_025 | Kink-turn related | ||
| IL_6X7K_044 | No text annotation | ||
| IL_6X7K_045 | No text annotation | ||
| IL_6X7K_047 | Not an internal loop | ||
| IL_6X7K_053 | Minor groove platform | ||
| IL_6X7K_060 | No text annotation | ||
| IL_6X7K_061 | Partly complementary | ||
| IL_6X7K_065 | Single bulged A | ||
| IL_6X7K_066 | No text annotation | ||
| IL_6X7K_067 | Triple sheared with non-canonical cWW | ||
| IL_6X7K_068 | Single bulged A | ||
| IL_6X7K_069 | Minor groove platform | ||
| IL_6X7K_070 | No text annotation | ||
| IL_6X7K_071 | Single stack bend | ||
| IL_6X7K_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6X7K_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6X7K_074 | No text annotation | ||
| IL_6X7K_075 | No text annotation | ||
| IL_6X7K_076 | No text annotation | ||
| IL_6X7K_077 | No text annotation | ||
| IL_6X7K_078 | Double sheared | ||
| IL_6X7K_079 | Isolated non-canonical cWW pair | ||
| IL_6X7K_080 | AAA cross-strand stack | ||
| IL_6X7K_081 | No text annotation | ||
| IL_6X7K_082 | tHW-tHW cross-strand stack | ||
| IL_6X7K_083 | Single bulged A | ||
| IL_6X7K_084 | Single bulged G | ||
| IL_6X7K_085 | Triple sheared | ||
| IL_6X7K_086 | Major groove platform | ||
| IL_6X7K_087 | Single stack bend | ||
| IL_6X7K_088 | Single stack bend | ||
| IL_6X7K_089 | Multiple bulged bases | ||
| IL_6X7K_090 | 90 degree turn | ||
| IL_6X7K_192 | No text annotation | ||
| IL_6X7K_091 | Stack outside cWW | ||
| IL_6X7K_092 | Single stack bend | ||
| IL_6X7K_193 | No text annotation | ||
| IL_6X7K_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6X7K_094 | Single bulged G | ||
| IL_6X7K_095 | C-loop with bulged stacked A's | ||
| IL_6X7K_096 | Isolated non-canonical cWW pair | ||
| IL_6X7K_097 | Double sheared with non-canonical cWW | ||
| IL_6X7K_194 | No text annotation | ||
| IL_6X7K_098 | No text annotation | ||
| IL_6X7K_099 | Single bulged C | ||
| IL_6X7K_100 | UAA/GAN | ||
| IL_6X7K_101 | SSU/LSU pseudoknot | ||
| IL_6X7K_102 | Single bulged U | ||
| IL_6X7K_103 | Kink-turn related | ||
| IL_6X7K_104 | No text annotation | ||
| IL_6X7K_105 | Isolated non-canonical cWW pair | ||
| IL_6X7K_106 | Tandem non-canonical cWW pairs | ||
| IL_6X7K_107 | Kink-turn | ||
| IL_6X7K_195 | No text annotation | ||
| IL_6X7K_108 | No text annotation | ||
| IL_6X7K_109 | Major groove platform | ||
| IL_6X7K_110 | Isolated cWS basepair | ||
| IL_6X7K_111 | No text annotation | ||
| IL_6X7K_112 | Kink-turn | ||
| IL_6X7K_113 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6X7K_114 | Major groove platform; stack outside cWW | ||
| IL_6X7K_115 | C-loop | ||
| IL_6X7K_116 | UAA/GAN | ||
| IL_6X7K_117 | tSH-tHW-tHS | ||
| IL_6X7K_118 | Single stack bend | ||
| IL_6X7K_119 | Single stack bend | ||
| IL_6X7K_196 | No text annotation | ||
| IL_6X7K_120 | No text annotation | ||
| IL_6X7K_121 | UAA/GAN | ||
| IL_6X7K_122 | Tandem non-canonical cWW pairs | ||
| IL_6X7K_123 | tSH-tHW | ||
| IL_6X7K_124 | Single bulged U | ||
| IL_6X7K_125 | No text annotation | ||
| IL_6X7K_126 | tSH-tHW-tHS | ||
| IL_6X7K_127 | No text annotation | ||
| IL_6X7K_201 | 180 degree turn | ||
| IL_6X7K_128 | Single bulged A | ||
| IL_6X7K_129 | UAA/GAN variation | ||
| IL_6X7K_130 | No text annotation | ||
| IL_6X7K_131 | Isolated tWW turn | ||
| IL_6X7K_132 | Major groove platform; stack outside cWW | ||
| IL_6X7K_197 | No text annotation | ||
| IL_6X7K_133 | Intercalated tWH | ||
| IL_6X7K_134 | tSH-tSH-tHH-tHS | ||
| IL_6X7K_135 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6X7K_136 | Triple sheared | ||
| IL_6X7K_137 | Single bulged C | ||
| IL_6X7K_138 | Single bulged A | ||
| IL_6X7K_139 | Kink-turn related | ||
| IL_6X7K_140 | Minor groove platform, major groove intercalation | ||
| IL_6X7K_141 | Major groove intercalation | ||
| IL_6X7K_142 | Major groove minor groove platform; mini C-loop | ||
| IL_6X7K_198 | No text annotation | ||
| IL_6X7K_143 | UAA/GAN related | ||
| IL_6X7K_144 | Bulged stacked bases | ||
| IL_6X7K_145 | No text annotation | ||
| IL_6X7K_146 | Major groove platform | ||
| IL_6X7K_147 | No text annotation | ||
| IL_6X7K_148 | No text annotation | ||
| IL_6X7K_149 | Not an internal loop | ||
| IL_6X7K_150 | Minor groove platform | ||
| IL_6X7K_151 | Isolated tHS basepair with bulges | ||
| IL_6X7K_152 | Isolated non-canonical cWW pair | ||
| IL_6X7K_153 | Isolated non-canonical cWW pair | ||
| IL_6X7K_154 | Isolated non-canonical cWW pair | ||
| IL_6X7K_155 | Isolated non-canonical cWW pair | ||
| IL_6X7K_156 | No text annotation | ||
| IL_6X7K_199 | No text annotation | ||
| IL_6X7K_157 | Kink-turn | ||
| IL_6X7K_158 | Single bulged U | ||
| IL_6X7K_159 | Double sheared | ||
| IL_6X7K_160 | No text annotation | ||
| IL_6X7K_161 | No text annotation | ||
| IL_6X7K_162 | No text annotation | ||
| IL_6X7K_163 | Major groove minor groove platform with extra cWW | ||
| IL_6X7K_164 | Double sheared with non-canonical cWW | ||
| IL_6X7K_165 | No text annotation | ||
| IL_6X7K_166 | Isolated non-canonical cWW with bulges | ||
| IL_6X7K_167 | No text annotation | ||
| IL_6X7K_168 | Major groove platform with intercalation | ||
| IL_6X7K_169 | No text annotation | ||
| IL_6X7K_170 | Single bulged A | ||
| IL_6X7K_171 | tSH-tHS-tHW | ||
| IL_6X7K_172 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6X7K_173 | C-loop | ||
| IL_6X7K_174 | UAA/GAN related, with intercalation | ||
| IL_6X7K_175 | Multiple bulged bases | ||
| IL_6X7K_176 | UAA/GAN with extra cWW | ||
| IL_6X7K_177 | No text annotation | ||
| IL_6X7K_178 | Major groove intercalation | ||
| IL_6X7K_179 | Multiple bulged bases with non-canonical cWW | ||
| IL_6X7K_180 | tHS double platform | ||
| IL_6X7K_181 | Major groove intercalation | ||
| IL_6X7K_182 | No text annotation | ||
| IL_6X7K_183 | Major groove minor groove platform; mini C-loop | ||
| IL_6X7K_184 | Symmetric double minor groove platform | ||
| IL_6X7K_185 | Bacterial 5S Loop E |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6X7K_001 | 1/D/46:47, 1/D/361:367, 1/D/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6X7K_027 | 1/D/46:52, 1/D/359:367, 1/D/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_6X7K_002 | 1/D/586:588, 1/D/651:654, 1/D/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_6X7K_028 | 1/D/586:588, 1/D/651:655, 1/D/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_6X7K_003 | 1/D/672:673, 1/D/717:725, 1/D/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6X7K_004 | 1/D/826:829, 1/D/857:861, 1/D/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6X7K_005 | 1/D/936:939, 1/D/1344:1350, 1/D/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_6X7K_029 | 1/D/943:946, 1/D/1235:1237, 1/D/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_6X7K_007 | 1/D/955:962, 1/D/973:984, 1/D/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6X7K_008 | 1/D/990:993, 1/D/1045:1047, 1/D/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6X7K_030 | 1/D/990:997, 1/D/1044:1047, 1/D/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_6X7K_009 | 1/D/1063:1068, 1/D/1107:1113, 1/D/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6X7K_010 | 1/D/1073:1074, 1/D/1083:1087, 1/D/1098:1102 | No text annotation | homologous J3_5J7L_009 NA | |
| J3_6X7K_011 | 1/D/1116:1118, 1/D/1155:1158, 1/D/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6X7K_031 | 1/D/1116:1118, 1/D/1155:1161, 1/D/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_6X7K_012 | 1/D/1237:1241, 1/D/1296:1303, 1/D/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_6X7K_002 | 1/B/7:10, 1/B/25:27, 1/B/43:49, 1/B/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_58311.1 | |
| J4_6X7K_003 | 1/D/115:122, 1/D/239:240, 1/D/286:289, 1/D/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_6X7K_004 | 1/D/142:144, 1/D/178:184, 1/D/193:198, 1/D/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_6X7K_005 | 1/D/575:577, 1/D/764:769, 1/D/810:821, 1/D/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_6X7K_001 | 1/D/36:39, 1/D/403:406, 1/D/436:440, 1/D/497:500, 1/D/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_6X7K_002 | 1/D/36:39, 1/D/403:406, 1/D/436:442, 1/D/492:500, 1/D/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_6X7K_003 | 1/D/58:61, 1/D/106:113, 1/D/314:316, 1/D/337:339, 1/D/350:354 | No text annotation | homologous J5_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6X7K_006 | No text annotation | ||
| J3_6X7K_013 | No text annotation | ||
| J3_6X7K_032 | No text annotation | ||
| J3_6X7K_033 | No text annotation | ||
| J3_6X7K_014 | No text annotation | ||
| J3_6X7K_034 | No text annotation | ||
| J3_6X7K_015 | No text annotation | ||
| J3_6X7K_016 | No text annotation | ||
| J3_6X7K_017 | No text annotation | ||
| J3_6X7K_018 | No text annotation | ||
| J3_6X7K_019 | No text annotation | ||
| J3_6X7K_020 | No text annotation | ||
| J3_6X7K_035 | No text annotation | ||
| J3_6X7K_021 | Kink-turn 3-way junction | ||
| J3_6X7K_036 | No text annotation | ||
| J3_6X7K_022 | No text annotation | ||
| J3_6X7K_023 | No text annotation | ||
| J3_6X7K_024 | No text annotation | ||
| J3_6X7K_025 | No text annotation | ||
| J3_6X7K_026 | No text annotation | ||
| J4_6X7K_001 | tRNA junction | ||
| J4_6X7K_006 | No text annotation | ||
| J4_6X7K_007 | No text annotation | ||
| J4_6X7K_008 | No text annotation | ||
| J4_6X7K_009 | No text annotation | ||
| J4_6X7K_010 | No text annotation | ||
| J4_6X7K_011 | No text annotation | ||
| J4_6X7K_012 | No text annotation | ||
| J4_6X7K_013 | No text annotation | ||
| J4_6X7K_014 | No text annotation | ||
| J4_6X7K_015 | No text annotation | ||
| J5_6X7K_004 | No text annotation | ||
| J5_6X7K_005 | No text annotation | ||
| J5_6X7K_006 | No text annotation | ||
| J5_6X7K_007 | No text annotation | ||
| J6_6X7K_001 | No text annotation | ||
| J7_6X7K_001 | No text annotation | ||
| J7_6X7K_002 | No text annotation |
Coloring options: