HL_6X7K_087
3D structure
- PDB id
- 6X7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGAUGC
- Length
- 9 nucleotides
- Bulged bases
- 6X7K|1|a|A|2031, 6X7K|1|a|G|2032
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6X7K_087 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1105
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6X7K|1|a|G|2027
6X7K|1|a|U|2028
6X7K|1|a|G|2029
6X7K|1|a|A|2031
6X7K|1|a|G|2032
6X7K|1|a|A|2033
6X7K|1|a|U|2034
6X7K|1|a|G|2035
6X7K|1|a|C|2036
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain i
- 50S ribosomal protein L32
- Chain j
- 50S ribosomal protein L3
Coloring options: