3D structure

PDB id
6X7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6X7K_097 not in the Motif Atlas
Homologous match to HL_4WF9_056
Geometric discrepancy: 0.1124
The information below is about HL_4WF9_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6X7K|1|a|A|2471
6X7K|1|a|G|2472
6X7K|1|a|U|2473
6X7K|1|a|U|2474
6X7K|1|a|C|2475
6X7K|1|a|A|2476
6X7K|1|a|U|2477
6X7K|1|a|A|2478
6X7K|1|a|U|2479

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36

Coloring options:


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