HL_6X9Q_002
3D structure
- PDB id
- 6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6X9Q_002 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.3335
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6X9Q|1|A|G|31
6X9Q|1|A|C|32
6X9Q|1|A|U|33
6X9Q|1|A|C|34
6X9Q|1|A|A|35
6X9Q|1|A|U|36
6X9Q|1|A|A|37
6X9Q|1|A|A|38
6X9Q|1|A|C|39
Current chains
- Chain A
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S7
- Chain Q
- 30S ribosomal protein S11
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