HL_6X9Q_084

3D structure

PDB id

6X9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

6X9Q|1|a|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6X9Q_084 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.224

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6X9Q|1|a|C|1868
6X9Q|1|a|G|1869
6X9Q|1|a|C|1870
6X9Q|1|a|A|1871
6X9Q|1|a|A|1872
6X9Q|1|a|G|1873

Current chains

Chain a

23S rRNA

Nearby chains