HL_6X9Q_096

3D structure

PDB id

6X9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6X9Q|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6X9Q_096 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0593

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6X9Q|1|a|U|2404
6X9Q|1|a|G|2405
6X9Q|1|a|A|2406
6X9Q|1|a|A|2407
6X9Q|1|a|U|2408
6X9Q|1|a|G|2409
6X9Q|1|a|G|2410
6X9Q|1|a|A|2411
6X9Q|1|a|A|2412
6X9Q|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15