HL_6XA1_016

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCCC

Length

6 nucleotides

Bulged bases

6XA1|1|L5|U|1166, 6XA1|1|L5|U|1167, 6XA1|1|L5|C|1169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_016 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.1631

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6XA1|1|L5|G|1165
6XA1|1|L5|U|1166
6XA1|1|L5|U|1167
6XA1|1|L5|C|1168
6XA1|1|L5|C|1169
6XA1|1|L5|C|1170

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like