6XA1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XA1_002 | 1/Bv/31:39 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_6XA1_004 | 1/L5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_6XA1_005 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_6XA1_006 | 1/L5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_6XA1_008 | 1/L5/201:208 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_6XA1_009 | 1/L5/219:223 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_6XA1_010 | 1/L5/227:235 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_6XA1_011 | 1/L5/280:289 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_6XA1_012 | 1/L5/305:314 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.2 | |
| HL_6XA1_112 | 1/L5/359:364 | GNRA | homologous HL_8P9A_122 HL_34789.2 | |
| HL_6XA1_113 | 1/L5/384:389 | GNRA | homologous HL_8C3A_011 NA | |
| HL_6XA1_016 | 1/L5/1165:1170 | Mini UNCG | geometric HL_4TUW_002 HL_12626.2 | |
| HL_6XA1_114 | 1/L5/1304:1313 | T-loop with 2 stacked bulged bases | homologous HL_8P9A_126 HL_33597.2 | |
| HL_6XA1_115 | 1/L5/1351:1360 | No text annotation | ||
| HL_6XA1_019 | 1/L5/1376:1381 | GNRA | homologous HL_8C3A_016 NA | |
| HL_6XA1_021 | 1/L5/1423:1435 | No text annotation | ||
| HL_6XA1_022 | 1/L5/1467:1471 | No text annotation | ||
| HL_6XA1_023 | 1/L5/1548:1553 | GNRA | homologous HL_5TBW_019 NA | |
| HL_6XA1_024 | 1/L5/1580:1589 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_6XA1_025 | 1/L5/1614:1622 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_6XA1_026 | 1/L5/1662:1667 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_6XA1_123 | 1/L5/1740:1764 | No text annotation | ||
| HL_6XA1_027 | 1/L5/1803:1810 | No text annotation | homologous HL_5TBW_024 NA | |
| HL_6XA1_028 | 1/L5/1851:1857 | GNRA | homologous HL_8C3A_025 NA | |
| HL_6XA1_029 | 1/L5/1873:1880 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_6XA1_030 | 1/L5/1944:2013 | No text annotation | ||
| HL_6XA1_031 | 1/L5/2244:2248 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_6XA1_032 | 1/L5/2304:2309 | GNRA | homologous HL_8C3A_030 NA | |
| HL_6XA1_033 | 1/L5/2363:2371 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_6XA1_034 | 1/L5/2407:2413 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_6XA1_035 | 1/L5/2445:2450 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_6XA1_037 | 1/L5/2510:2519 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_6XA1_039 | 1/L5/2565:2570 | GNRA | homologous HL_5TBW_036 NA | |
| HL_6XA1_116 | 1/L5/2611:2619 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_6XA1_041 | 1/L5/2651:2657 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_6XA1_042 | 1/L5/2691:2699 | No text annotation | geometric HL_2Y9H_005 HL_44506.2 | |
| HL_6XA1_043 | 1/L5/2725:2729 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_6XA1_044 | 1/L5/2779:2786 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_6XA1_045 | 1/L5/2797:2803 | GNRA | homologous HL_5TBW_042 NA | |
| HL_6XA1_046 | 1/L5/2859:2864 | UNCG | geometric HL_4V9F_044 HL_61337.2 | |
| HL_6XA1_048 | 1/L5/3593:3597 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_6XA1_117 | 1/L5/3618:3628 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_6XA1_050 | 1/L5/3647:3653 | GNRA | homologous HL_8C3A_047 NA | |
| HL_6XA1_118 | 1/L5/3703:3708 | GNRA | homologous HL_8P9A_159 HL_34789.2 | |
| HL_6XA1_052 | 1/L5/3736:3746 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_6XA1_053 | 1/L5/3775:3783 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_6XA1_054 | 1/L5/3852:3861 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_6XA1_055 | 1/L5/3925:4045 | No text annotation | ||
| HL_6XA1_056 | 1/L5/4163:4171 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_6XA1_057 | 1/L5/4180:4192 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_6XA1_058 | 1/L5/4220:4228 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_6XA1_059 | 1/L5/4240:4247 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_6XA1_060 | 1/L5/4271:4279 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_6XA1_061 | 1/L5/4291:4296 | GNRA | homologous HL_5TBW_059 NA | |
| HL_6XA1_062 | 1/L5/4322:4332 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_6XA1_063 | 1/L5/4387:4395 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_6XA1_064 | 1/L5/4444:4451 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_6XA1_065 | 1/L5/4467:4473 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6XA1_066 | 1/L5/4510:4515 | GNRA | homologous HL_5TBW_064 NA | |
| HL_6XA1_067 | 1/L5/4573:4578 | GNRA | geometric HL_5J7L_197 NA | |
| HL_6XA1_068 | 1/L5/4616:4621 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_6XA1_069 | 1/L5/4658:4672 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_6XA1_070 | 1/L5/4872:4879 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_6XA1_071 | 1/L5/4940:4948 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_6XA1_072 | 1/L5/4986:4993 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6XA1_119 | 1/L7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_6XA1_073 | 1/L7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_6XA1_074 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_6XA1_075 | 1/L8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_6XA1_076 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_6XA1_077 | 1/L8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_6XA1_078 | 1/L8/122:128 | No text annotation | ||
| HL_6XA1_079 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_6XA1_080 | 1/S2/69:80 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6XA1_081 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_6XA1_083 | 1/S2/288:295 | T-loop with 1 bulged base | geometric HL_4V88_191 NA | |
| HL_6XA1_084 | 1/S2/322:329 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6XA1_085 | 1/S2/377:387 | No text annotation | ||
| HL_6XA1_086 | 1/S2/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_6XA1_087 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_6XA1_120 | 1/S2/462:467 | UNCG | homologous HL_8C3A_202 NA | |
| HL_6XA1_089 | 1/S2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_6XA1_091 | 1/S2/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_6XA1_092 | 1/S2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_6XA1_093 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_6XA1_094 | 1/S2/833:841 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_6XA1_121 | 1/S2/957:966 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_6XA1_096 | 1/S2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_6XA1_097 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_6XA1_098 | 1/S2/1113:1120 | No text annotation | geometric HL_4WF9_011 HL_75660.7 | |
| HL_6XA1_099 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_6XA1_100 | 1/S2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_6XA1_101 | 1/S2/1245:1254 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_6XA1_102 | 1/S2/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_6XA1_103 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_6XA1_104 | 1/S2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_6XA1_105 | 1/S2/1417:1422 | Mini UNCG related | geometric HL_6AJK_001 HL_12626.2 | |
| HL_6XA1_106 | 1/S2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_6XA1_107 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_6XA1_122 | 1/S2/1614:1625 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_6XA1_109 | 1/S2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_6XA1_111 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XA1_001 | No text annotation | ||
| HL_6XA1_003 | T-loop with 2 stacked bulged bases | ||
| HL_6XA1_007 | No text annotation | ||
| HL_6XA1_013 | GNRA with extra cWW | ||
| HL_6XA1_014 | No text annotation | ||
| HL_6XA1_015 | No text annotation | ||
| HL_6XA1_017 | No text annotation | ||
| HL_6XA1_018 | No text annotation | ||
| HL_6XA1_020 | No text annotation | ||
| HL_6XA1_036 | No text annotation | ||
| HL_6XA1_038 | GNRA | ||
| HL_6XA1_040 | No text annotation | ||
| HL_6XA1_047 | No text annotation | ||
| HL_6XA1_049 | No text annotation | ||
| HL_6XA1_051 | No text annotation | ||
| HL_6XA1_082 | GNRA | ||
| HL_6XA1_088 | No text annotation | ||
| HL_6XA1_090 | No text annotation | ||
| HL_6XA1_095 | No text annotation | ||
| HL_6XA1_108 | No text annotation | ||
| HL_6XA1_110 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XA1_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6XA1_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_6XA1_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6XA1_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_6XA1_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_6XA1_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_6XA1_007 | 1/L5/118:121, 1/L5/149:150 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_6XA1_266 | 1/L5/118:122, 1/L5/144:150 | No text annotation | ||
| IL_6XA1_008 | 1/L5/121:122, 1/L5/144:149 | No text annotation | geometric IL_4V9F_009 IL_10396.1 | |
| IL_6XA1_009 | 1/L5/125:126, 1/L5/139:141 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6XA1_010 | 1/L5/166:170, 1/L5/254:257 | No text annotation | ||
| IL_6XA1_011 | 1/L5/171:186, 1/L5/249:253 | No text annotation | ||
| IL_6XA1_012 | 1/L5/192:193, 1/L5/241:243 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_6XA1_013 | 1/L5/196:198, 1/L5/211:212 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_6XA1_014 | 1/L5/330:333, 1/L8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_55206.1 | |
| IL_6XA1_015 | 1/L5/339:341, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_6XA1_016 | 1/L5/378:381, 1/L5/392:405 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_6XA1_018 | 1/L5/406:412, 1/L8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
| IL_6XA1_019 | 1/L5/434:437, 1/L5/1287:1291 | No text annotation | ||
| IL_6XA1_020 | 1/L5/439:441, 1/L5/1284:1285 | No text annotation | ||
| IL_6XA1_021 | 1/L5/450:451, 1/L5/686:688 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_6XA1_022 | 1/L5/453:455, 1/L5/682:684 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6XA1_023 | 1/L5/457:463, 1/L5/673:680 | No text annotation | ||
| IL_6XA1_024 | 1/L5/473:476, 1/L5/662:663 | Multiple bulged bases | geometric IL_5WTK_001 IL_71421.2 | |
| IL_6XA1_267 | 1/L5/478:495, 1/L5/645:660 | No text annotation | ||
| IL_6XA1_025 | 1/L5/499:501, 1/L5/640:641 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_6XA1_026 | 1/L5/700:701, 1/L5/1273:1275 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_6XA1_027 | 1/L5/714:715, 1/L5/929:932 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6XA1_028 | 1/L5/718:722, 1/L5/925:926 | No text annotation | ||
| IL_6XA1_029 | 1/L5/723:726, 1/L5/915:924 | No text annotation | ||
| IL_6XA1_030 | 1/L5/728:731, 1/L5/912:913 | No text annotation | ||
| IL_6XA1_032 | 1/L5/736:743, 1/L5/898:906 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_6XA1_033 | 1/L5/1060:1061, 1/L5/1224:1226 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_6XA1_034 | 1/L5/1064:1066, 1/L5/1207:1221 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_6XA1_035 | 1/L5/1069:1071, 1/L5/1200:1204 | Isolated cWS basepair | geometric IL_4WF9_034 NA | |
| IL_6XA1_036 | 1/L5/1073:1074, 1/L5/1196:1198 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_6XA1_037 | 1/L5/1080:1081, 1/L5/1188:1190 | No text annotation | ||
| IL_6XA1_268 | 1/L5/1080:1083, 1/L5/1186:1190 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.2 | |
| IL_6XA1_038 | 1/L5/1081:1083, 1/L5/1186:1188 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.2 | |
| IL_6XA1_040 | 1/L5/1160:1162, 1/L5/1173:1175 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10892.2 | |
| IL_6XA1_041 | 1/L5/1231:1232, 1/L5/1252:1254 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6XA1_042 | 1/L5/1344:1347, 1/L5/1366:1369 | No text annotation | ||
| IL_6XA1_269 | 1/L5/1344:1348, 1/L5/1363:1369 | No text annotation | ||
| IL_6XA1_043 | 1/L5/1347:1348, 1/L5/1363:1366 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.2 | |
| IL_6XA1_044 | 1/L5/1412:1416, 1/L5/1442:1447 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_6XA1_045 | 1/L5/1418:1421, 1/L5/1437:1440 | Double sheared | geometric IL_4XWF_001 IL_58355.2 | |
| IL_6XA1_046 | 1/L5/1454:1455, 1/L5/1483:1485 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_6XA1_047 | 1/L5/1461:1463, 1/L5/1476:1477 | Single stack bend | geometric IL_7A0S_005 IL_15011.2 | |
| IL_6XA1_048 | 1/L5/1466:1467, 1/L5/1471:1473 | Single bulged C | geometric IL_5J7L_311 NA | |
| IL_6XA1_270 | 1/L5/1507:1509, 1/L5/1642:1644 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_6XA1_271 | 1/L5/1509:1513, 1/L5/1635:1642 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_6XA1_050 | 1/L5/1532:1533, 1/L5/1599:1601 | Single bulged A | geometric IL_4WF9_022 IL_14190.2 | |
| IL_6XA1_051 | 1/L5/1537:1538, 1/L5/1563:1565 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_6XA1_052 | 1/L5/1538:1542, 1/L5/1559:1563 | Triple sheared | geometric IL_4V9F_027 IL_15190.2 | |
| IL_6XA1_053 | 1/L5/1573:1576, 1/L5/1592:1594 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_6XA1_054 | 1/L5/1577:1579, 1/L5/1590:1591 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_6XA1_055 | 1/L5/1611:1613, 1/L5/1623:1627 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_6XA1_056 | 1/L5/1658:1660, 1/L5/1669:1671 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_6XA1_057 | 1/L5/1673:1675, 1/L5/1835:1838 | No text annotation | ||
| IL_6XA1_058 | 1/L5/1681:1708, 1/L5/1828:1829 | No text annotation | ||
| IL_6XA1_059 | 1/L5/1710:1712, 1/L5/1825:1826 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_6XA1_272 | 1/L5/1719:1724, 1/L5/1779:1784 | No text annotation | ||
| IL_6XA1_273 | 1/L5/1724:1725, 1/L5/1777:1779 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_6XA1_274 | 1/L5/1726:1731, 1/L5/1773:1776 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_6XA1_275 | 1/L5/1733:1736, 1/L5/1768:1771 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_6XA1_276 | 1/L5/1736:1738, 1/L5/1766:1768 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_6XA1_063 | 1/L5/1740:1746, 1/L5/1760:1764 | No text annotation | ||
| IL_6XA1_064 | 1/L5/1801:1803, 1/L5/1810:1811 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_6XA1_277 | 1/L5/1845:1847, 1/L5/1861:1863 | Isolated non-canonical cWW pair | geometric IL_1UN6_005 IL_01003.2 | |
| IL_6XA1_066 | 1/L5/1892:1896, 1/L5/2054:2058 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_6XA1_067 | 1/L5/1898:1905, 1/L5/2051:2052 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_6XA1_068 | 1/L5/1905:1907, 1/L5/2050:2051 | No text annotation | ||
| IL_6XA1_069 | 1/L5/1907:1909, 1/L5/2049:2050 | No text annotation | ||
| IL_6XA1_070 | 1/L5/1913:1920, 1/L5/2040:2045 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_6XA1_071 | 1/L5/1920:1931, 1/L5/2025:2040 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_6XA1_072 | 1/L5/1933:1935, 1/L5/2022:2023 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_6XA1_073 | 1/L5/2070:2072, 1/L5/2259:2260 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_6XA1_279 | 1/L5/2074:2244, 1/L5/2248:2257 | No text annotation | ||
| IL_6XA1_074 | 1/L5/2277:2279, 1/L5/2329:2332 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_6XA1_075 | 1/L5/2286:2288, 1/L5/2321:2322 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_6XA1_076 | 1/L5/2289:2296, 1/L5/2316:2320 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_6XA1_077 | 1/L5/2299:2301, 1/L5/2312:2313 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_6XA1_280 | 1/L5/2345:2351, 1/L5/3837:3842 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_6XA1_078 | 1/L5/2393:2396, 1/L5/2770:2771 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_6XA1_281 | 1/L5/2402:2406, 1/L5/2414:2416 | C-loop | homologous IL_8C3A_482 NA | |
| IL_6XA1_080 | 1/L5/2433:2437, 1/L5/2496:2501 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_6XA1_081 | 1/L5/2464:2466, 1/L5/2486:2487 | Minor groove platform | geometric IL_6DLR_003 IL_34520.2 | |
| IL_6XA1_082 | 1/L5/2529:2534, 1/L5/2759:2761 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_42997.5 | |
| IL_6XA1_083 | 1/L5/2536:2537, 1/L5/2755:2757 | Single bulged U | geometric IL_2A64_002 IL_97561.2 | |
| IL_6XA1_084 | 1/L5/2576:2580, 1/L5/2739:2743 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_6XA1_085 | 1/L5/2600:2601, 1/L5/2711:2713 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_6XA1_086 | 1/L5/2601:2602, 1/L5/2709:2711 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_6XA1_087 | 1/L5/2633:2635, 1/L5/2672:2675 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_6XA1_088 | 1/L5/2638:2640, 1/L5/2668:2669 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_6XA1_089 | 1/L5/2643:2649, 1/L5/2659:2665 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_6XA1_282 | 1/L5/2819:2825, 1/L5/3829:3832 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_6XA1_283 | 1/L5/2831:2833, 1/L5/3821:3823 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_6XA1_284 | 1/L5/2834:2837, 1/L5/3819:3820 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_6XA1_285 | 1/L5/2834:2842, 1/L5/3816:3820 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_6XA1_093 | 1/L5/2837:2842, 1/L5/3816:3819 | Intercalated tWH | geometric IL_4V9F_062 IL_28217.1 | |
| IL_6XA1_094 | 1/L5/2854:2859, 1/L5/2864:2870 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_6XA1_095 | 1/L5/2876:2878, 1/L5/3589:3591 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_6XA1_096 | 1/L5/2883:2884, 1/L5/3581:3584 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_6XA1_097 | 1/L5/2888:2894, 1/L5/3567:3577 | No text annotation | ||
| IL_6XA1_100 | 1/L5/3611:3612, 1/L5/3806:3808 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_6XA1_101 | 1/L5/3639:3644, 1/L5/3656:3663 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_6XA1_103 | 1/L5/3679:3682, 1/L5/3728:3729 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_6XA1_104 | 1/L5/3683:3684, 1/L5/3724:3727 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_6XA1_106 | 1/L5/3687:3689, 1/L5/3720:3721 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_6XA1_107 | 1/L5/3689:3693, 1/L5/3718:3720 | Multiple bulged bases, near cWW | geometric IL_5M0H_002 NA | |
| IL_6XA1_286 | 1/L5/3694:3700, 1/L5/3711:3717 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_6XA1_111 | 1/L5/3759:3760, 1/L5/3790:3793 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_6XA1_287 | 1/L5/3760:3771, 1/L5/3787:3790 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_6XA1_113 | 1/L5/3874:3877, 1/L5/4533:4535 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_6XA1_115 | 1/L5/3879:3881, 1/L5/4528:4531 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_6XA1_116 | 1/L5/3892:3894, 1/L5/4358:4359 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_6XA1_117 | 1/L5/3895:3896, 1/L5/4354:4357 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_6XA1_119 | 1/L5/3906:3908, 1/L5/4151:4154 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_6XA1_120 | 1/L5/4060:4066, 1/L5/4131:4134 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_6XA1_121 | 1/L5/4069:4106, 1/L5/4125:4128 | No text annotation | ||
| IL_6XA1_122 | 1/L5/4161:4162, 1/L5/4172:4174 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_6XA1_123 | 1/L5/4213:4215, 1/L5/4233:4237 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_6XA1_288 | 1/L5/4261:4263, 1/L5/4287:4288 | No text annotation | ||
| IL_6XA1_289 | 1/L5/4265:4268, 1/L5/4282:4285 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_6XA1_126 | 1/L5/4317:4320, 1/L5/4334:4335 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6XA1_290 | 1/L5/4370:4371, 1/L5/4412:4414 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_6XA1_291 | 1/L5/4371:4373, 1/L5/4410:4412 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.2 | |
| IL_6XA1_292 | 1/L5/4373:4375, 1/L5/4409:4410 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_6XA1_293 | 1/L5/4375:4377, 1/L5/4405:4409 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_6XA1_130 | 1/L5/4382:4386, 1/L5/4396:4400 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_6XA1_131 | 1/L5/4423:4424, 1/L5/4496:4498 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_6XA1_294 | 1/L5/4426:4428, 1/L5/4490:4494 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_6XA1_133 | 1/L5/4428:4429, 1/L5/4487:4490 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_6XA1_134 | 1/L5/4436:4438, 1/L5/4459:4461 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6XA1_295 | 1/L5/4436:4440, 1/L5/4455:4461 | No text annotation | ||
| IL_6XA1_135 | 1/L5/4438:4440, 1/L5/4455:4459 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_6XA1_138 | 1/L5/4465:4467, 1/L5/4473:4475 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_6XA1_140 | 1/L5/4507:4508, 1/L5/4517:4519 | Single bulged A | geometric IL_5J7L_344 NA | |
| IL_6XA1_143 | 1/L5/4550:4552, 1/L5/4691:4693 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
| IL_6XA1_144 | 1/L5/4552:4555, 1/L5/4687:4691 | Double sheared | geometric IL_6E7L_002 IL_69065.1 | |
| IL_6XA1_296 | 1/L5/4560:4562, 1/L5/4588:4590 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.2 | |
| IL_6XA1_145 | 1/L5/4566:4573, 1/L5/4578:4584 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_6XA1_297 | 1/L5/4594:4599, 1/L5/4639:4643 | No text annotation | ||
| IL_6XA1_298 | 1/L5/4602:4607, 1/L5/4632:4636 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_6XA1_148 | 1/L5/4608:4610, 1/L5/4629:4631 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.2 | |
| IL_6XA1_149 | 1/L5/4611:4612, 1/L5/4625:4628 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_6XA1_150 | 1/L5/4650:4655, 1/L5/4675:4680 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_6XA1_151 | 1/L5/4709:4711, 1/L5/4923:4924 | No text annotation | ||
| IL_6XA1_152 | 1/L5/4712:4715, 1/L5/4919:4922 | Tandem non-canonical cWW pairs | geometric IL_5J7L_283 NA | |
| IL_6XA1_153 | 1/L5/4718:4720, 1/L5/4913:4916 | No text annotation | ||
| IL_6XA1_154 | 1/L5/4725:4734, 1/L5/4834:4842 | No text annotation | ||
| IL_6XA1_155 | 1/L5/4738:4740, 1/L5/4828:4830 | Isolated non-canonical cWW pair | geometric IL_3RG5_002 IL_68118.2 | |
| IL_6XA1_156 | 1/L5/4850:4854, 1/L5/4895:4899 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_71154.2 | |
| IL_6XA1_157 | 1/L5/4856:4861, 1/L5/4889:4893 | No text annotation | ||
| IL_6XA1_300 | 1/L5/4937:4940, 1/L5/4948:4951 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.2 | |
| IL_6XA1_159 | 1/L5/4957:4959, 1/L5/5022:5024 | Isolated non-canonical cWW pair | geometric IL_3IVK_002 IL_01003.2 | |
| IL_6XA1_160 | 1/L5/4961:4962, 1/L5/5018:5020 | No text annotation | ||
| IL_6XA1_161 | 1/L5/4965:4967, 1/L5/5010:5015 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_6XA1_162 | 1/L5/4968:4974, 1/L5/5004:5009 | No text annotation | ||
| IL_6XA1_164 | 1/L5/4977:4982, 1/L5/4997:5001 | No text annotation | ||
| IL_6XA1_165 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_6XA1_166 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_6XA1_167 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_6XA1_168 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_6XA1_169 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_6XA1_170 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_6XA1_171 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_6XA1_322 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_6XA1_301 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_5UNE_006 IL_38565.2 | |
| IL_6XA1_302 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_6XA1_175 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_6XA1_176 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_6XA1_177 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_6XA1_178 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_6XA1_179 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_6XA1_180 | 1/S2/108:110, 1/S2/351:353 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
| IL_6XA1_181 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.2 | |
| IL_6XA1_182 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_6XA1_303 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_8P9A_382 IL_31545.1 | |
| IL_6XA1_184 | 1/S2/123:124, 1/S2/339:341 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_6XA1_185 | 1/S2/130:144, 1/S2/175:182 | No text annotation | ||
| IL_6XA1_304 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_6XA1_305 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_87720.1 | |
| IL_6XA1_188 | 1/S2/188:192, 1/S2/207:211 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 | |
| IL_6XA1_189 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_6XA1_190 | 1/S2/223:288, 1/S2/295:298 | No text annotation | ||
| IL_6XA1_191 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_6XA1_192 | 1/S2/317:320, 1/S2/331:333 | No text annotation | homologous IL_4V88_400 NA | |
| IL_6XA1_193 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_6XA1_194 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_6XA1_195 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_6XA1_196 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_6XA1_306 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_6XA1_307 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | geometric IL_4LFB_014 IL_97561.2 | |
| IL_6XA1_308 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8P9A_397 IL_26900.1 | |
| IL_6XA1_198 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6XA1_199 | 1/S2/529:530, 1/S2/554:556 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_6XA1_200 | 1/S2/563:565, 1/S2/585:592 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_6XA1_201 | 1/S2/566:569, 1/S2/581:584 | tSH-tHW | geometric IL_5UNE_005 IL_76776.1 | |
| IL_6XA1_202 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_6XA1_203 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_6XA1_205 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_6XA1_206 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_6XA1_207 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_6XA1_208 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_6XA1_209 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_6XA1_310 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_8P9A_412 IL_73108.2 | |
| IL_6XA1_211 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_6XA1_311 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_6XA1_213 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_01003.2 | |
| IL_6XA1_214 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_6XA1_215 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_6XA1_312 | 1/S2/925:927, 1/S2/1014:1017 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_6XA1_217 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_6XA1_218 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_6XA1_219 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6XA1_220 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_6XA1_221 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_6XA1_222 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_6XA1_223 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_6XA1_224 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_6XA1_225 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_6XA1_226 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_6XA1_227 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_6XA1_229 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_6XA1_313 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_6XA1_231 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_6XA1_314 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.2 | |
| IL_6XA1_234 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_6XA1_235 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_6XA1_323 | 1/S2/1281:1287, 1/S2/1314:1316 | No text annotation | ||
| IL_6XA1_324 | 1/S2/1281:1290, 1/S2/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_6XA1_237 | 1/S2/1287:1290, 1/S2/1309:1314 | No text annotation | ||
| IL_6XA1_238 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_6XA1_317 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_6XA1_240 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_6XA1_318 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_6XA1_241 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_6XA1_319 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_6XA1_320 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.2 | |
| IL_6XA1_244 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_6XA1_245 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_15225.2 | |
| IL_6XA1_247 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_6XA1_248 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6XA1_249 | 1/S2/1416:1417, 1/S2/1422:1424 | No text annotation | ||
| IL_6XA1_250 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4J39_001 IL_01003.2 | |
| IL_6XA1_321 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_6XA1_251 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_6XA1_252 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.2 | |
| IL_6XA1_253 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_6XA1_254 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_6XA1_255 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_6XA1_256 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_6XA1_257 | 1/S2/1708:1711, 1/S2/1822:1826 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_15225.2 | |
| IL_6XA1_258 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_6XA1_259 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_6XA1_260 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_6XA1_261 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_6XA1_262 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_6XA1_263 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_004 IL_01003.2 | |
| IL_6XA1_264 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XA1_017 | Isolated non-canonical cWW pair | ||
| IL_6XA1_031 | No text annotation | ||
| IL_6XA1_039 | No text annotation | ||
| IL_6XA1_049 | No text annotation | ||
| IL_6XA1_060 | No text annotation | ||
| IL_6XA1_061 | No text annotation | ||
| IL_6XA1_062 | No text annotation | ||
| IL_6XA1_065 | Tandem non-canonical cWW pairs | ||
| IL_6XA1_278 | No text annotation | ||
| IL_6XA1_079 | No text annotation | ||
| IL_6XA1_090 | No text annotation | ||
| IL_6XA1_091 | No text annotation | ||
| IL_6XA1_092 | Major groove platform with extra pair | ||
| IL_6XA1_098 | Isolated non-canonical cWW pair | ||
| IL_6XA1_099 | Not an internal loop | ||
| IL_6XA1_102 | Stack and bulge | ||
| IL_6XA1_105 | No text annotation | ||
| IL_6XA1_108 | No text annotation | ||
| IL_6XA1_109 | Not an internal loop | ||
| IL_6XA1_110 | Not an internal loop | ||
| IL_6XA1_112 | No text annotation | ||
| IL_6XA1_114 | Isolated non-canonical cWW pair | ||
| IL_6XA1_118 | Isolated non-canonical cWW pair | ||
| IL_6XA1_124 | Decoding loop related | ||
| IL_6XA1_125 | No text annotation | ||
| IL_6XA1_127 | No text annotation | ||
| IL_6XA1_128 | No text annotation | ||
| IL_6XA1_129 | Not an internal loop | ||
| IL_6XA1_132 | No text annotation | ||
| IL_6XA1_136 | Not an internal loop | ||
| IL_6XA1_137 | Isolated non-canonical cWW pair | ||
| IL_6XA1_139 | No text annotation | ||
| IL_6XA1_141 | Isolated non-canonical cWW pair | ||
| IL_6XA1_142 | Not an internal loop | ||
| IL_6XA1_146 | No text annotation | ||
| IL_6XA1_147 | Triple sheared related | ||
| IL_6XA1_299 | Isolated non-canonical cWW pair | ||
| IL_6XA1_158 | Single bulged C | ||
| IL_6XA1_163 | Stack and bulge | ||
| IL_6XA1_172 | No text annotation | ||
| IL_6XA1_173 | No text annotation | ||
| IL_6XA1_174 | Isolated non-canonical cWW pair | ||
| IL_6XA1_183 | No text annotation | ||
| IL_6XA1_186 | No text annotation | ||
| IL_6XA1_187 | Tandem non-canonical cWW pairs | ||
| IL_6XA1_197 | No text annotation | ||
| IL_6XA1_309 | Isolated non-canonical cWW pair | ||
| IL_6XA1_204 | Not an internal loop | ||
| IL_6XA1_210 | No text annotation | ||
| IL_6XA1_212 | No text annotation | ||
| IL_6XA1_216 | Tandem non-canonical cWW pairs | ||
| IL_6XA1_228 | Stack and bulge | ||
| IL_6XA1_230 | Intercalated cWW | ||
| IL_6XA1_232 | Isolated non-canonical cWW pair | ||
| IL_6XA1_233 | Tandem non-canonical cWW pairs | ||
| IL_6XA1_236 | No text annotation | ||
| IL_6XA1_315 | No text annotation | ||
| IL_6XA1_316 | Tandem non-canonical cWW pairs | ||
| IL_6XA1_239 | Isolated non-canonical cWW pair | ||
| IL_6XA1_242 | Isolated non-canonical cWW pair | ||
| IL_6XA1_243 | No text annotation | ||
| IL_6XA1_246 | No text annotation | ||
| IL_6XA1_265 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XA1_001 | 1/L5/112:116, 1/L5/152:157, 1/L5/266:269 | No text annotation | ||
| J3_6XA1_031 | 1/L5/193:196, 1/L5/212:225, 1/L5/237:241 | No text annotation | ||
| J3_6XA1_032 | 1/L5/342:358, 1/L5/365:370, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_6XA1_002 | 1/L5/371:378, 1/L5/405:406, 1/L8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_6XA1_033 | 1/L5/371:381, 1/L5/392:406, 1/L8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_6XA1_034 | 1/L5/442:446, 1/L5/692:696, 1/L5/1279:1283 | No text annotation | ||
| J3_6XA1_003 | 1/L5/703:704, 1/L5/942:963, 1/L5/1265:1271 | No text annotation | ||
| J3_6XA1_004 | 1/L5/1518:1524, 1/L5/1609:1611, 1/L5/1627:1630 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_6XA1_005 | 1/L5/1533:1535, 1/L5/1567:1571, 1/L5/1596:1599 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_6XA1_035 | 1/L5/1713:1714, 1/L5/1789:1793, 1/L5/1819:1824 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_6XA1_006 | 1/L5/2380:2386, 1/L5/2792:2794, 1/L5/2806:2809 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_6XA1_007 | 1/L5/2389:2392, 1/L5/2772:2778, 1/L5/2787:2789 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_6XA1_008 | 1/L5/2427:2432, 1/L5/2502:2506, 1/L5/2523:2524 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_6XA1_036 | 1/L5/2438:2443, 1/L5/2452:2463, 1/L5/2488:2495 | No text annotation | ||
| J3_6XA1_009 | 1/L5/2538:2542, 1/L5/2559:2562, 1/L5/2744:2754 | No text annotation | ||
| J3_6XA1_010 | 1/L5/2562:2563, 1/L5/2572:2576, 1/L5/2743:2744 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_6XA1_037 | 1/L5/2585:2589, 1/L5/2724:2725, 1/L5/2729:2734 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_6XA1_011 | 1/L5/3916:3918, 1/L5/4052:4056, 1/L5/4138:4143 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_6XA1_038 | 1/L5/4198:4200, 1/L5/4301:4312, 1/L5/4340:4345 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_6XA1_012 | 1/L5/4211:4213, 1/L5/4237:4239, 1/L5/4248:4253 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_6XA1_013 | 1/L5/4433:4436, 1/L5/4461:4463, 1/L5/4477:4483 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_6XA1_039 | 1/L5/4720:4723, 1/L5/4844:4848, 1/L5/4901:4913 | No text annotation | ||
| J3_6XA1_040 | 1/L5/4935:4937, 1/L5/4951:4956, 1/L5/5025:5028 | No text annotation | ||
| J3_6XA1_041 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_6XA1_016 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_6XA1_042 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
| J3_6XA1_043 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_6XA1_018 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_6XA1_044 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_6XA1_019 | 1/S2/685:800, 1/S2/865:874, 1/S2/912:917 | No text annotation | ||
| J3_6XA1_020 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_6XA1_045 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_6XA1_022 | 1/S2/1094:1097, 1/S2/1135:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_6XA1_023 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_6XA1_024 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_6XA1_046 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8P9A_078 J3_88451.1 | |
| J3_6XA1_026 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_4V88_038 NA | |
| J3_6XA1_027 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_6XA1_028 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_6XA1_047 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_6XA1_030 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_6XA1_001 | 1/Bv/7:10, 1/Bv/25:27, 1/Bv/43:49, 1/Bv/65:66 | tRNA junction | homologous J4_7EQJ_002 J4_95067.1 | |
| J4_6XA1_002 | 1/L5/111:112, 1/L5/269:274, 1/L5/295:301, 1/L5/318:321 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_6XA1_003 | 1/L5/193:196, 1/L5/212:219, 1/L5/223:225, 1/L5/237:241 | No text annotation | ||
| J4_6XA1_004 | 1/L5/968:970, 1/L5/1057:1059, 1/L5/1227:1230, 1/L5/1255:1260 | No text annotation | ||
| J4_6XA1_005 | 1/L5/2352:2358, 1/L5/2376:2378, 1/L5/2811:2816, 1/L5/3835:3836 | No text annotation | ||
| J4_6XA1_006 | 1/L5/2393:2397, 1/L5/2421:2426, 1/L5/2525:2526, 1/L5/2764:2771 | No text annotation | ||
| J4_6XA1_007 | 1/L5/2396:2397, 1/L5/2421:2426, 1/L5/2525:2526, 1/L5/2764:2770 | No text annotation | ||
| J4_6XA1_008 | 1/L5/2605:2606, 1/L5/2624:2629, 1/L5/2679:2685, 1/L5/2705:2706 | No text annotation | ||
| J4_6XA1_009 | 1/L5/3613:3617, 1/L5/3629:3633, 1/L5/3669:3673, 1/L5/3800:3805 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_6XA1_010 | 1/L5/3675:3677, 1/L5/3731:3732, 1/L5/3750:3759, 1/L5/3793:3798 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_6XA1_011 | 1/L5/4201:4205, 1/L5/4259:4261, 1/L5/4288:4289, 1/L5/4298:4300 | No text annotation | ||
| J4_6XA1_012 | 1/L5/4201:4205, 1/L5/4259:4263, 1/L5/4287:4289, 1/L5/4298:4300 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_6XA1_013 | 1/L5/4557:4560, 1/L5/4590:4591, 1/L5/4646:4648, 1/L5/4682:4685 | No text annotation | ||
| J4_6XA1_014 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_6XA1_015 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_6XA1_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_6XA1_002 | 1/L5/1322:1327, 1/L5/1503:1506, 1/L5/1645:1648, 1/L5/2275:2277, 1/L5/2332:2338 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_6XA1_003 | 1/L5/2842:2850, 1/L5/2874:2875, 1/L5/3592:3593, 1/L5/3597:3605, 1/L5/3814:3816 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_6XA1_004 | 1/L5/3882:3889, 1/L5/4362:4370, 1/L5/4414:4423, 1/L5/4498:4504, 1/L5/4522:4527 | No text annotation | ||
| J5_6XA1_005 | 1/L5/3899:3902, 1/L5/4158:4161, 1/L5/4174:4175, 1/L5/4197:4198, 1/L5/4345:4351 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_6XA1_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_6XA1_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_6XA1_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_6XA1_010 | 1/S2/125:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:338 | No text annotation | ||
| J6_6XA1_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/323:330, 1/L8/33:35 | No text annotation | ||
| J6_6XA1_002 | 1/L5/1339:1342, 1/L5/1371:1375, 1/L5/1382:1386, 1/L5/1405:1408, 1/L5/1451:1453, 1/L5/1486:1491 | No text annotation | ||
| J6_6XA1_003 | 1/L5/3899:3902, 1/L5/4158:4161, 1/L5/4174:4175, 1/L5/4197:4200, 1/L5/4301:4312, 1/L5/4340:4351 | No text annotation | ||
| J7_6XA1_001 | 1/L5/1653:1658, 1/L5/1671:1672, 1/L5/1839:1842, 1/L5/1866:1871, 1/L5/1882:1886, 1/L5/2064:2065, 1/L5/2265:2270 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XA1_014 | No text annotation | ||
| J3_6XA1_015 | No text annotation | ||
| J3_6XA1_017 | No text annotation | ||
| J3_6XA1_021 | No text annotation | ||
| J3_6XA1_025 | No text annotation | ||
| J3_6XA1_029 | No text annotation | ||
| J5_6XA1_009 | No text annotation |
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