HL_6XA1_028

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6XA1|1|L5|G|1856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_028 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0835

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6XA1|1|L5|G|1851
6XA1|1|L5|G|1852
6XA1|1|L5|U|1853
6XA1|1|L5|A|1854
6XA1|1|L5|A|1855
6XA1|1|L5|G|1856
6XA1|1|L5|C|1857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like