HL_6XA1_030

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUAGACAGCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAA

Length

70 nucleotides

Bulged bases

6XA1|1|L5|A|1947, 6XA1|1|L5|G|1960, 6XA1|1|L5|A|1966, 6XA1|1|L5|U|1967, 6XA1|1|L5|G|1968, 6XA1|1|L5|G|1975, 6XA1|1|L5|A|1977, 6XA1|1|L5|C|1983, 6XA1|1|L5|U|1984, 6XA1|1|L5|A|1985, 6XA1|1|L5|A|1996, 6XA1|1|L5|C|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|U|1944
6XA1|1|L5|A|1945
6XA1|1|L5|U|1946
6XA1|1|L5|A|1947
6XA1|1|L5|G|1948
6XA1|1|L5|A|1949
6XA1|1|L5|C|1950
6XA1|1|L5|A|1951
6XA1|1|L5|G|1952
6XA1|1|L5|C|1953
6XA1|1|L5|A|1954
6XA1|1|L5|G|1955
6XA1|1|L5|G|1956
6XA1|1|L5|A|1957
6XA1|1|L5|C|1958
6XA1|1|L5|G|1959
6XA1|1|L5|G|1960
6XA1|1|L5|U|1961
6XA1|1|L5|G|1962
6XA1|1|L5|G|1963
6XA1|1|L5|C|1964
6XA1|1|L5|C|1965
6XA1|1|L5|A|1966
6XA1|1|L5|U|1967
6XA1|1|L5|G|1968
6XA1|1|L5|G|1969
6XA1|1|L5|A|1970
6XA1|1|L5|A|1971
6XA1|1|L5|G|1972
6XA1|1|L5|U|1973
6XA1|1|L5|C|1974
6XA1|1|L5|G|1975
6XA1|1|L5|G|1976
6XA1|1|L5|A|1977
6XA1|1|L5|A|1978
6XA1|1|L5|U|1979
6XA1|1|L5|C|1980
6XA1|1|L5|C|1981
6XA1|1|L5|G|1982
6XA1|1|L5|C|1983
6XA1|1|L5|U|1984
6XA1|1|L5|A|1985
6XA1|1|L5|A|1986
6XA1|1|L5|G|1987
6XA1|1|L5|G|1988
6XA1|1|L5|A|1989
6XA1|1|L5|G|1990
6XA1|1|L5|U|1991
6XA1|1|L5|G|1992
6XA1|1|L5|U|1993
6XA1|1|L5|G|1994
6XA1|1|L5|U|1995
6XA1|1|L5|A|1996
6XA1|1|L5|A|1997
6XA1|1|L5|C|1998
6XA1|1|L5|A|1999
6XA1|1|L5|A|2000
6XA1|1|L5|C|2001
6XA1|1|L5|U|2002
6XA1|1|L5|C|2003
6XA1|1|L5|A|2004
6XA1|1|L5|C|2005
6XA1|1|L5|C|2006
6XA1|1|L5|U|2007
6XA1|1|L5|G|2008
6XA1|1|L5|C|2009
6XA1|1|L5|C|2010
6XA1|1|L5|G|2011
6XA1|1|L5|A|2012
6XA1|1|L5|A|2013

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

60S ribosomal protein L40

Chain j

Eukaryotic peptide chain release factor subunit 1