HL_6XA1_037

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6XA1|1|L5|U|2517, 6XA1|1|L5|C|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_037 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0961

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6XA1|1|L5|G|2510
6XA1|1|L5|U|2511
6XA1|1|L5|U|2512
6XA1|1|L5|C|2513
6XA1|1|L5|A|2514
6XA1|1|L5|G|2515
6XA1|1|L5|A|2516
6XA1|1|L5|U|2517
6XA1|1|L5|C|2518
6XA1|1|L5|C|2519

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34