HL_6XA1_038

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_038 not in the Motif Atlas

Geometric match to HL_3AM1_003

Geometric discrepancy: 0.2716

The information below is about HL_3AM1_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6XA1|1|L5|C|2548
6XA1|1|L5|G|2549
6XA1|1|L5|C|2550
6XA1|1|L5|G|2551
6XA1|1|L5|A|2552
6XA1|1|L5|G|2553

Current chains

Chain L5

28S rRNA

Nearby chains