HL_6XA1_054

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6XA1|1|L5|A|3855, 6XA1|1|L5|A|3856, 6XA1|1|L5|C|3857

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_054 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0777

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6XA1|1|L5|G|3852
6XA1|1|L5|G|3853
6XA1|1|L5|G|3854
6XA1|1|L5|A|3855
6XA1|1|L5|A|3856
6XA1|1|L5|C|3857
6XA1|1|L5|G|3858
6XA1|1|L5|G|3859
6XA1|1|L5|G|3860
6XA1|1|L5|C|3861

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32