HL_6XA1_056

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6XA1|1|L5|G|4165

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_056 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1429

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6XA1|1|L5|C|4163
6XA1|1|L5|U|4164
6XA1|1|L5|G|4165
6XA1|1|L5|OMG|4166
6XA1|1|L5|G|4167
6XA1|1|L5|G|4168
6XA1|1|L5|C|4169
6XA1|1|L5|G|4170
6XA1|1|L5|G|4171

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29

Chain j

Eukaryotic peptide chain release factor subunit 1