HL_6XA1_058

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_058 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1292

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6XA1|1|L5|G|4220
6XA1|1|L5|A|4221
6XA1|1|L5|C|4222
6XA1|1|L5|A|4223
6XA1|1|L5|G|4224
6XA1|1|L5|A|4225
6XA1|1|L5|A|4226
6XA1|1|L5|A|4227
6XA1|1|L5|C|4228

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11