HL_6XA1_069

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6XA1|1|L5|G|4664, 6XA1|1|L5|C|4668

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1845

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6XA1|1|L5|C|4658
6XA1|1|L5|PSU|4659
6XA1|1|L5|G|4660
6XA1|1|L5|A|4661
6XA1|1|L5|A|4662
6XA1|1|L5|C|4663
6XA1|1|L5|G|4664
6XA1|1|L5|C|4665
6XA1|1|L5|C|4666
6XA1|1|L5|U|4667
6XA1|1|L5|C|4668
6XA1|1|L5|U|4669
6XA1|1|L5|A|4670
6XA1|1|L5|A|4671
6XA1|1|L5|G|4672

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

60S ribosomal protein L40