HL_6XA1_071

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6XA1|1|L5|U|4941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_071 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1021

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XA1|1|L5|G|4940
6XA1|1|L5|U|4941
6XA1|1|L5|A|4942
6XA1|1|L5|G|4943
6XA1|1|L5|A|4944
6XA1|1|L5|C|4945
6XA1|1|L5|G|4946
6XA1|1|L5|A|4947
6XA1|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17