HL_6XA1_080

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCUACAG

Length

9 nucleotides

Bulged bases

6XA1|1|S2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_080 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3503

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XA1|1|S2|C|69
6XA1|1|S2|G|70
6XA1|1|S2|G|71
6XA1|1|S2|C|72
6XA1|1|S2|U|76
6XA1|1|S2|A|77
6XA1|1|S2|C|78
6XA1|1|S2|A|79
6XA1|1|S2|G|80

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6