HL_6XA1_082

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_082 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.1935

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6XA1|1|S2|U|197
6XA1|1|S2|U|198
6XA1|1|S2|C|199
6XA1|1|S2|G|200
6XA1|1|S2|C|201
6XA1|1|S2|G|202

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8