HL_6XA1_108

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUGCAAUUAU(PSU)C

Length

14 nucleotides

Bulged bases

6XA1|1|S2|U|1621, 6XA1|1|S2|U|1622, 6XA1|1|S2|A|1623

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|S2|G|1613
6XA1|1|S2|A|1614
6XA1|1|S2|U|1615
6XA1|1|S2|U|1616
6XA1|1|S2|G|1617
6XA1|1|S2|C|1618
6XA1|1|S2|A|1619
6XA1|1|S2|A|1620
6XA1|1|S2|U|1621
6XA1|1|S2|U|1622
6XA1|1|S2|A|1623
6XA1|1|S2|U|1624
6XA1|1|S2|PSU|1625
6XA1|1|S2|C|1626

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain Sd

40S ribosomal protein S29