HL_6XDQ_007
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- 6XDQ|1|D|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XDQ_007 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0815
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XDQ|1|D|U|12
6XDQ|1|D|U|13
6XDQ|1|D|U|14
6XDQ|1|D|G|15
6XDQ|1|D|A|16
6XDQ|1|D|U|17
6XDQ|1|D|C|18
6XDQ|1|D|A|19
6XDQ|1|D|U|20
6XDQ|1|D|G|21
6XDQ|1|D|G|22
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 30 nt long spacer
- Chain K
- 30S ribosomal protein S5
- Chain R
- 30S ribosomal protein S12
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