HL_6XDR_086

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6XDR|1|a|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XDR_086 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0627

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6XDR|1|a|G|1949
6XDR|1|a|G|1950
6XDR|1|a|U|1951
6XDR|1|a|A|1952
6XDR|1|a|A|1953
6XDR|1|a|G|1954
6XDR|1|a|U|1955
6XDR|1|a|U|1956
6XDR|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain t

50S ribosomal protein L14