3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
6XDR|1|a|G|2529
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XDR_098 not in the Motif Atlas
Homologous match to HL_5J7L_194
Geometric discrepancy: 0.0849
The information below is about HL_5J7L_194
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

6XDR|1|a|U|2528
6XDR|1|a|G|2529
6XDR|1|a|A|2530
6XDR|1|a|A|2531
6XDR|1|a|G|2532
6XDR|1|a|U|2533
6XDR|1|a|A|2534
6XDR|1|a|G|2535

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36

Coloring options:


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