HL_6XE0_012

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6XE0|1|W|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XE0_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2242

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6XE0|1|W|G|462
6XE0|1|W|U|463
6XE0|1|W|U|464
6XE0|1|W|A|465
6XE0|1|W|A|466
6XE0|1|W|U|467
6XE0|1|W|A|468
6XE0|1|W|C|469
6XE0|1|W|C|470

Current chains

Chain W

16s rRNA

Nearby chains