6XE0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6XE0_001 | 1/W/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6XE0_002 | 1/W/82:87 | No text annotation | ||
| HL_6XE0_003 | 1/W/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_6XE0_004 | 1/W/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_6XE0_005 | 1/W/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
| HL_6XE0_006 | 1/W/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6XE0_007 | 1/W/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_6XE0_008 | 1/W/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6XE0_009 | 1/W/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6XE0_010 | 1/W/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_6XE0_011 | 1/W/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_6XE0_012 | 1/W/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 HL_81538.2 | |
| HL_6XE0_013 | 1/W/522:527 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_6XE0_014 | 1/W/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_10453.3 | |
| HL_6XE0_015 | 1/W/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_6XE0_016 | 1/W/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_6XE0_017 | 1/W/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6XE0_018 | 1/W/840:846 | No text annotation | ||
| HL_6XE0_019 | 1/W/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_6XE0_020 | 1/W/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_6XE0_021 | 1/W/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_6XE0_022 | 1/W/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_6XE0_023 | 1/W/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_6XE0_024 | 1/W/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6XE0_025 | 1/W/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_6XE0_026 | 1/W/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_6XE0_027 | 1/W/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_6XE0_028 | 1/W/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6XE0_029 | 1/W/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6XE0_030 | 1/W/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6XE0_031 | 1/W/1515:1520 | GNRA variation | geometric HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XE0_032 | No text annotation | ||
| HL_6XE0_033 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6XE0_001 | 1/W/30:32, 1/W/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_6XE0_002 | 1/W/44:45, 1/W/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_6XE0_003 | 1/W/47:52, 1/W/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_6XE0_004 | 1/W/54:56, 1/W/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_6XE0_005 | 1/W/63:66, 1/W/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_6XE0_006 | 1/W/67:69, 1/W/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_6XE0_007 | 1/W/70:73, 1/W/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6XE0_008 | 1/W/75:76, 1/W/93:95 | Major groove intercalation | geometric IL_7A0S_099 IL_00225.14 | |
| IL_6XE0_009 | 1/W/128:131, 1/W/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_6XE0_010 | 1/W/132:136, 1/W/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_6XE0_011 | 1/W/144:146, 1/W/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_6XE0_012 | 1/W/147:153, 1/W/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6XE0_013 | 1/W/203:206, 1/W/213:214 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
| IL_6XE0_014 | 1/W/242:247, 1/W/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6XE0_015 | 1/W/249:252, 1/W/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_6XE0_016 | 1/W/292:293, 1/W/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6XE0_017 | 1/W/367:369, 1/W/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_6XE0_018 | 1/W/371:375, 1/W/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_6XE0_019 | 1/W/375:376, 1/W/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
| IL_6XE0_020 | 1/W/409:416, 1/W/427:433 | No text annotation | homologous IL_5J7L_020 IL_28026.3 | |
| IL_6XE0_021 | 1/W/440:442, 1/W/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6XE0_022 | 1/W/446:450, 1/W/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_6XE0_023 | 1/W/450:455, 1/W/477:483 | No text annotation | geometric IL_5J7L_023 IL_70801.1 | |
| IL_6XE0_024 | 1/W/504:511, 1/W/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_6XE0_025 | 1/W/515:521, 1/W/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6XE0_026 | 1/W/569:575, 1/W/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_6XE0_027 | 1/W/580:584, 1/W/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6XE0_028 | 1/W/594:596, 1/W/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_6XE0_029 | 1/W/597:598, 1/W/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6XE0_030 | 1/W/605:612, 1/W/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6XE0_031 | 1/W/654:655, 1/W/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_6XE0_032 | 1/W/659:660, 1/W/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6XE0_033 | 1/W/662:666, 1/W/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6XE0_068 | 1/W/673:677, 1/W/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_6XE0_035 | 1/W/684:688, 1/W/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6XE0_036 | 1/W/774:778, 1/W/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_6XE0_037 | 1/W/779:783, 1/W/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_6XE0_038 | 1/W/887:894, 1/W/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6XE0_039 | 1/W/922:923, 1/W/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_6XE0_069 | 1/W/922:924, 1/W/1392:1395 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_07785.1 | |
| IL_6XE0_040 | 1/W/925:927, 1/W/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_6XE0_041 | 1/W/933:935, 1/W/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6XE0_042 | 1/W/953:954, 1/W/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6XE0_043 | 1/W/993:997, 1/W/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_6XE0_044 | 1/W/998:999, 1/W/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_6XE0_045 | 1/W/1003:1006, 1/W/1023:1037 | No text annotation | ||
| IL_6XE0_046 | 1/W/1048:1050, 1/W/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_6XE0_047 | 1/W/1052:1056, 1/W/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_6XE0_048 | 1/W/1057:1058, 1/W/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6XE0_049 | 1/W/1060:1061, 1/W/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_6XE0_050 | 1/W/1061:1063, 1/W/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_6XE0_051 | 1/W/1124:1128, 1/W/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_6XE0_052 | 1/W/1129:1132, 1/W/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6XE0_053 | 1/W/1158:1161, 1/W/1175:1181 | No text annotation | geometric IL_4LFB_050 IL_42032.1 | |
| IL_6XE0_054 | 1/W/1247:1253, 1/W/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6XE0_055 | 1/W/1255:1258, 1/W/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_6XE0_056 | 1/W/1259:1263, 1/W/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6XE0_057 | 1/W/1303:1308, 1/W/1329:1334 | No text annotation | homologous IL_5J7L_057 IL_85536.2 | |
| IL_6XE0_058 | 1/W/1399:1401, 1/W/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_6XE0_059 | 1/W/1401:1404, 1/W/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6XE0_060 | 1/W/1405:1407, 1/W/1494:1496 | Isolated cWH basepair | geometric IL_4J50_001 IL_10167.6 | |
| IL_6XE0_072 | 1/W/1405:1410, 1/W/1490:1496 | No text annotation | ||
| IL_6XE0_061 | 1/W/1407:1411, 1/W/1489:1494 | No text annotation | ||
| IL_6XE0_062 | 1/W/1412:1414, 1/W/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6XE0_063 | 1/W/1416:1419, 1/W/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6XE0_073 | 1/W/1430:1435, 1/W/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_6XE0_065 | 1/W/1440:1442, 1/W/1460:1461 | Single bulged A | geometric IL_4V9F_098 IL_31462.7 | |
| IL_6XE0_066 | 1/W/1445:1448, 1/W/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XE0_067 | No text annotation | ||
| IL_6XE0_034 | No text annotation | ||
| IL_6XE0_070 | No text annotation | ||
| IL_6XE0_071 | No text annotation | ||
| IL_6XE0_064 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6XE0_001 | 1/W/46:47, 1/W/361:367, 1/W/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6XE0_013 | 1/W/46:52, 1/W/359:367, 1/W/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6XE0_002 | 1/W/586:588, 1/W/651:654, 1/W/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6XE0_014 | 1/W/586:588, 1/W/651:655, 1/W/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6XE0_003 | 1/W/672:673, 1/W/717:725, 1/W/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6XE0_004 | 1/W/826:829, 1/W/857:861, 1/W/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6XE0_005 | 1/W/936:939, 1/W/1344:1350, 1/W/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6XE0_006 | 1/W/943:946, 1/W/1235:1237, 1/W/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6XE0_007 | 1/W/955:962, 1/W/973:984, 1/W/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6XE0_008 | 1/W/990:993, 1/W/1045:1047, 1/W/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_6XE0_015 | 1/W/990:997, 1/W/1044:1047, 1/W/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_6XE0_009 | 1/W/1063:1068, 1/W/1107:1113, 1/W/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_6XE0_010 | 1/W/1073:1074, 1/W/1083:1087, 1/W/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_6XE0_011 | 1/W/1116:1118, 1/W/1155:1158, 1/W/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6XE0_016 | 1/W/1116:1118, 1/W/1155:1161, 1/W/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_6XE0_012 | 1/W/1237:1241, 1/W/1296:1303, 1/W/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J4_6XE0_001 | 1/W/115:122, 1/W/239:240, 1/W/286:289, 1/W/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6XE0_002 | 1/W/142:144, 1/W/178:184, 1/W/193:198, 1/W/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_6XE0_003 | 1/W/575:577, 1/W/764:769, 1/W/810:821, 1/W/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J5_6XE0_001 | 1/W/36:39, 1/W/403:406, 1/W/436:440, 1/W/497:500, 1/W/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_6XE0_002 | 1/W/36:39, 1/W/403:406, 1/W/436:442, 1/W/492:500, 1/W/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_6XE0_003 | 1/W/58:61, 1/W/106:113, 1/W/314:316, 1/W/337:339, 1/W/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 |
Problematic loops
No problematic loops
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