6XE0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6XE0_001 | No text annotation | ||
| HL_6XE0_032 | No text annotation | ||
| HL_6XE0_002 | No text annotation | ||
| HL_6XE0_003 | GNRA | ||
| HL_6XE0_004 | GNRA | ||
| HL_6XE0_005 | UNCG | ||
| HL_6XE0_006 | GNRA related | ||
| HL_6XE0_007 | GNRA | ||
| HL_6XE0_008 | No text annotation | ||
| HL_6XE0_009 | UNCG | ||
| HL_6XE0_010 | GNRA | ||
| HL_6XE0_011 | UNCG | ||
| HL_6XE0_012 | GNRA wlth extra near cWW | ||
| HL_6XE0_013 | No text annotation | ||
| HL_6XE0_014 | GNRA-like with tWH | ||
| HL_6XE0_015 | No text annotation | ||
| HL_6XE0_016 | GNRA | ||
| HL_6XE0_017 | No text annotation | ||
| HL_6XE0_018 | No text annotation | ||
| HL_6XE0_019 | GNRA | ||
| HL_6XE0_020 | GNRA | ||
| HL_6XE0_021 | No text annotation | ||
| HL_6XE0_022 | GNRA | ||
| HL_6XE0_023 | GNRA | ||
| HL_6XE0_024 | T-loop related | ||
| HL_6XE0_033 | No text annotation | ||
| HL_6XE0_025 | No text annotation | ||
| HL_6XE0_026 | GNRA | ||
| HL_6XE0_027 | GNRA | ||
| HL_6XE0_028 | T-loop with 3 stacked bulged bases | ||
| HL_6XE0_029 | No text annotation | ||
| HL_6XE0_030 | UNCG | ||
| HL_6XE0_031 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6XE0_001 | Single bulged G | ||
| IL_6XE0_002 | Single bulged A | ||
| IL_6XE0_003 | No text annotation | ||
| IL_6XE0_004 | Minor groove platform | ||
| IL_6XE0_005 | Multiple bulged bases | ||
| IL_6XE0_006 | Minor groove platform with extra cWW | ||
| IL_6XE0_007 | Minor groove platform | ||
| IL_6XE0_008 | Major groove intercalation | ||
| IL_6XE0_009 | Isolated non-canonical cWW pair | ||
| IL_6XE0_010 | Minor groove platform related | ||
| IL_6XE0_011 | Isolated cWH basepair | ||
| IL_6XE0_012 | tWH-tWH-tHW-tHW | ||
| IL_6XE0_013 | Minor groove platform | ||
| IL_6XE0_014 | Kink-turn with non-sequential stacking | ||
| IL_6XE0_015 | No text annotation | ||
| IL_6XE0_016 | C-loop | ||
| IL_6XE0_017 | Single bulged U | ||
| IL_6XE0_018 | C-loop | ||
| IL_6XE0_019 | Single bulged G | ||
| IL_6XE0_020 | No text annotation | ||
| IL_6XE0_021 | No text annotation | ||
| IL_6XE0_022 | tSH-tHW-tWW | ||
| IL_6XE0_023 | No text annotation | ||
| IL_6XE0_024 | SSU/LSU pseudoknot | ||
| IL_6XE0_025 | Kink-turn related | ||
| IL_6XE0_026 | No text annotation | ||
| IL_6XE0_027 | tSH-tHW-tHS | ||
| IL_6XE0_028 | Major groove platform | ||
| IL_6XE0_029 | Major groove minor groove platform; mini C-loop | ||
| IL_6XE0_067 | No text annotation | ||
| IL_6XE0_030 | No text annotation | ||
| IL_6XE0_031 | Major groove platform; stack outside cWW | ||
| IL_6XE0_032 | Single stack bend | ||
| IL_6XE0_033 | Tandem non-canonical cWW pairs | ||
| IL_6XE0_068 | Triple non-canonical cWW pairs | ||
| IL_6XE0_034 | No text annotation | ||
| IL_6XE0_035 | Kink-turn | ||
| IL_6XE0_036 | Left turn | ||
| IL_6XE0_037 | tSH-tHW-tHS | ||
| IL_6XE0_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6XE0_039 | Single bulged A | ||
| IL_6XE0_069 | Isolated non-canonical cWW with bulges | ||
| IL_6XE0_040 | Single bulged G | ||
| IL_6XE0_041 | Minor groove platform | ||
| IL_6XE0_042 | No text annotation | ||
| IL_6XE0_043 | Minor groove platform | ||
| IL_6XE0_070 | No text annotation | ||
| IL_6XE0_044 | Single stack bend | ||
| IL_6XE0_045 | No text annotation | ||
| IL_6XE0_046 | Single bulged U | ||
| IL_6XE0_047 | Isolated cWS basepair | ||
| IL_6XE0_048 | Minor groove platform | ||
| IL_6XE0_049 | Single bulged A | ||
| IL_6XE0_050 | Isolated non-canonical cWW pair | ||
| IL_6XE0_051 | No text annotation | ||
| IL_6XE0_052 | Minor groove platform | ||
| IL_6XE0_053 | No text annotation | ||
| IL_6XE0_054 | No text annotation | ||
| IL_6XE0_055 | 180 degree turn | ||
| IL_6XE0_056 | Double sheared with non-canonical cWW | ||
| IL_6XE0_057 | No text annotation | ||
| IL_6XE0_058 | No text annotation | ||
| IL_6XE0_059 | No text annotation | ||
| IL_6XE0_060 | Isolated cWH basepair | ||
| IL_6XE0_072 | No text annotation | ||
| IL_6XE0_071 | No text annotation | ||
| IL_6XE0_061 | No text annotation | ||
| IL_6XE0_062 | Isolated non-canonical cWW pair | ||
| IL_6XE0_063 | Double sheared | ||
| IL_6XE0_064 | No text annotation | ||
| IL_6XE0_073 | Triple sheared related | ||
| IL_6XE0_065 | Single bulged A | ||
| IL_6XE0_066 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6XE0_001 | No text annotation | ||
| J3_6XE0_013 | No text annotation | ||
| J3_6XE0_002 | No text annotation | ||
| J3_6XE0_014 | No text annotation | ||
| J3_6XE0_003 | No text annotation | ||
| J3_6XE0_004 | No text annotation | ||
| J3_6XE0_005 | No text annotation | ||
| J3_6XE0_006 | No text annotation | ||
| J3_6XE0_007 | No text annotation | ||
| J3_6XE0_008 | No text annotation | ||
| J3_6XE0_015 | No text annotation | ||
| J3_6XE0_009 | No text annotation | ||
| J3_6XE0_010 | No text annotation | ||
| J3_6XE0_011 | No text annotation | ||
| J3_6XE0_016 | No text annotation | ||
| J3_6XE0_012 | No text annotation | ||
| J4_6XE0_001 | No text annotation | ||
| J4_6XE0_002 | No text annotation | ||
| J4_6XE0_003 | No text annotation | ||
| J5_6XE0_001 | No text annotation | ||
| J5_6XE0_002 | No text annotation | ||
| J5_6XE0_003 | No text annotation |
Coloring options: