3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
GAUAACGC
Length
8 nucleotides
Bulged bases
6XGF|1|D|A|968, 6XGF|1|D|G|971
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XGF_027 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.1798
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6XGF|1|D|G|963
6XGF|1|D|A|964
6XGF|1|D|U|965
6XGF|1|D|A|968
6XGF|1|D|A|969
6XGF|1|D|C|970
6XGF|1|D|G|971
6XGF|1|D|C|972

Current chains

Chain D
16S rRNA

Nearby chains

Chain O
30S ribosomal protein S9
Chain P
30S ribosomal protein S10

Coloring options:


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