3D structure

PDB id
6XGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 30 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
5 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
6XGF|1|a|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XGF_040 not in the Motif Atlas
Homologous match to HL_5J7L_136
Geometric discrepancy: 0.075
The information below is about HL_5J7L_136
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82710.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6XGF|1|a|G|123
6XGF|1|a|G|124
6XGF|1|a|A|125
6XGF|1|a|A|126
6XGF|1|a|A|127
6XGF|1|a|C|128

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L23
Chain m
50S ribosomal protein L34

Coloring options:


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